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Minggu, 15 Mei 2016

UK Five Year Antimicrobial Resistance Strategy 2013 to 2018 Part I of II

The other day I was on my way to Birmingham to attend the debate on Antimicrobial Resistance. The event was organised by the Institute of Microbiology and Infection (University of Birmingham), the British Science Association and also by Antibiotic Action (an independent UK-led global initiative funded by the British Society for Antimicrobial Chemotherapy). It was Monday after a full day of work, but antimicrobial resistance is a passion of mine and I couldnt miss it for anything in this world. I will therefore save a post just for unveiling the movie and debate that followed it. I took loads of interesting notes and really think it will be great to share these with those of you who couldnt make it. 

Anyhoo, on my way to Birmingham I opened and summarised these forty-odd pages of a document I found online by randomly searching for news on antimicrobial resistance. I speak of the "UK Five Year Antimicrobial Resistance Strategy 2013 2018" (access here for PDF). You know, I didnt want to be there just to attend or just to observe, even though I knew whatever participation I had in this event it would always be great for me. But I needed more; I needed insight, technical perspectives, political positions, action. Yes, I needed to know what action was being undertaken to tackle the ever growing issue of antimicrobial resistance in this little world of ours.

I am hereby summarising the red hot paragraphs that were ratified by the Northern Ireland Executive, the Welsh Government and the Scottish Government. I hope that my little work here is appreciated and you get to understand a bit better what is in motion regarding antimicrobial strategies in the UK.

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Executive Summary

The scale of the threat of antimicrobial resistance (AMR) and the case for action was set out in the ‘Annual Report of the Chief Medical Officer, 2011’, 2 published in March 2013. This ‘UK Five Year Antimicrobial Resistance Strategy 2013 to 2018’ sets out actions to address the key challenges to AMR.

... antibiotic resistance cannot be eradicated ... This Strategy sets out how the UK intends to address the challenges detailed in the ‘CMO’s Annual Report’... The Strategy has been informed by input from a wide range of experts in different disciplines and its delivery will involve many partners and require cross organisational co-operation at local, national and international levels.

The overarching goal of the Strategy is to slow the development and spread of AMR. It focusses activities around 3 strategic aims: 
• improve the knowledge and understanding of AMR, 
• conserve and steward the effectiveness of existing treatments, 
• stimulate the development of new antibiotics, diagnostics and novel therapies.

                                       Introduction

The initial emergence of resistance is random, arising by mutations (errors as DNA is copied in bacterial replication) or gene exchange among bacteria. The use of antibiotics then favours the spread of those bacteria that have become resistant. 

... travel and changes in population demographics also help resistant bacteria to spread.

In 2009, it was estimated by the European Centre for Disease Prevention and Control (ECDC) that AMR costs the EU about €1.5 billion in healthcare expenses and lost productivity each year.


Examples of actions taken in the UK to improve prescribing practice and other measures to tackle antibiotic resistance

Since 2008, ‘European Antibiotic Awareness Day’ (EAAD) is held in November each year...

‘Treat Antibiotics Responsibly, Guidance and Education Tool’ (TARGET) was developed by the [then] Health Protection Agency... 

There is another similar initiative, ‘Stemming the Tide of Antibiotic Resistance’ educational programme (STAR).

In recent years, hospital use of antibiotics has improved through the introduction of antimicrobial stewardship programmes...

... a number of measures [...]  focused on reducing the overall use of antibiotics, reducing the use of cephalosporin and quinolone antibiotics (associated with an increased risk of Clostridium difficile infection), and recommending a 3 day course of trimethoprim for uncomplicated urinary tract infections, rather than longer courses. These measures are underpinned by authoritative, evidence based guidance developed by NICE.

... the addition [...] of a requirement within the ‘Code of Professional Conduct for Veterinary Surgeons 2012’ for veterinarians to use antimicrobials responsibly...

... formation of the Responsible Use of Medicines in Agriculture (RUMA) Alliance ...

... production of ‘leaflets on responsible use’...

A voluntary ban by the British Poultry Council on the use of certain antibiotics ...  

The UK Clinical Research Collaboration (UKCRC) ‘Translational Infections Research Initiative’ is a £16.5 million partnership of funders (DH / NIHR, MRC, Wellcome Trust and others) which runs from 2008 to 2015 to carry out research relevant to AMR and infection control. 

To date, £20 million has been invested to support the development of point of care diagnostics and to improve the ability of UK businesses to provide solutions for the global marketplace, boost UK economic performance and provide higher quality public services.

Despite these efforts, AMR has continued to escalate and further action is needed...




The UK Commitment to Action

The UK used its presidency of the G8 in June 2013 to host a meeting of G8 Science Ministers where AMR was discussed. It was agreed that AMR is a priority issue that demands an urgent global cross-sectoral response and research to better understand the origin, spread, evolution and development of resistance. The UK is also supporting work on AMR that will be considered at the ‘World Innovation Summit for Health’ in Doha in December 2013. 

Strategic Aims and Approach

i) improve the knowledge and understanding of AMR,

ii) conserve and steward the effectiveness of existing treatments,

iii) stimulate the development of new antibiotics, diagnostics and novel therapies.

The 7 key areas for future action

i) improving infection prevention and control practices 

ii) optimising prescribing practice

iii) improving professional education, training and public engagement

iv) developing new drugs, treatments and diagnostics

v) better access to and use of surveillance data

vi) better identification and prioritisation of AMR research needs

vii) strengthened international collaboration.

The 7 Key Areas for Future Action

Key area 1: improving infection prevention and control practices
...  limit the emergence and spread of multi-drug resistant organisms in human and animals. For example, the significant fall seen in recent years, across the UK, of MRSA bloodstream infections and improvement in hand hygiene illustrates that with concerted effort... Particular national and international attention is needed on Gram Negative organisms like Klebsiella species, where resistance to critical antibiotics is emerging and spreading.

Key area 2: optimising prescribing practice
Indiscriminate or inappropriate use of antibiotics is a key driver in the spread of antibiotic resistance. [...] most prescribing is carried out in the absence of adequate information... we equally need to ensure use of the right drug, right dose at the right time and for the right duration to limit unnecessary antibiotic exposure. Genomic technologies have potential to provide a valuable means to improve appropriate, prompt, patient treatment.   

Key area 3: improving professional education, training and public engagement
Clinicians involved in prescribing need to remain up to date with emerging evidence on resistance and appropriate antibiotic usage... Patients frequently believe, incorrectly, that antibiotics will help them recover from all respiratory tract infections faster. In addition, studies have shown17 that up to 25% of patients in England do not finish their course of antibiotics or keep them for later use, all practices that encourage AMR.

Key area 4: developing new drugs, treatments and diagnostics
Human and veterinary rapid diagnostics are urgently needed to help differentiate between bacterial and viral infections, as well as to enable fast identification of highly-resistant strains. 

The discovery and development of new drugs takes time (about 10 to 15 years) and a barrier to developing new antibiotics is their relatively low commercial return on investment, relative to investments in other therapeutic areas. This low return on investment is driven by: 
• scientific difficulty of finding new agents, 
• risk of inadequate return on investment given that duration of drug use is limited compared to drugs for chronic conditions, 
• concerns over the cost and complexity of the regulatory approval process, 
• uncertainty about the regulatory environment for new antimicrobials. 

Regulatory uncertainty is dissuading pharmaceutical companies from developing new antimicrobial products for veterinary use. Pharmaceutical companies have expressed concern that potential new controls and additional data requirements may limit the market for any new products and thus limit return on investment.

Equally important is the research and development of novel approaches to the treatment and prevention of infections. This includes using substances to strengthen the immune response to bacterial infection, such as pre and probiotics. Naturally occurring bacteriophages, their enzymes and vaccines are already under consideration.

Key area 5: better access to and use of surveillance data
Better sharing of [...] information and data [...] 

Key area 6: better identification and prioritisation of AMR research needs
... the Biotechnology and Biological Sciences Research Council (BBSRC)28 provides ongoing support for research activities with a focus on AMR, including EU-level coordination. 

[...] research is needed to provide a more detailed understanding of the significance of different transmission pathways between the environment, humans, animals and the food supply chain in promoting transfer or increase of resistance in human and veterinary pathogens [and]  to develop new technologies, including human and veterinary rapid diagnostic tests to differentiate between bacterial and viral infections, enable fast identification of the organisms causing disease, and to identify high-risk strains and their resistance.

Key area 7: strengthened international collaboration
The UK is playing a leading role in influencing European and international thinking, seeking support, securing commitments to prioritise the issue and mobilising action to deliver the scale of change needed. 

More joint initiatives like the ‘EU /USA Transatlantic Task Force on AMR’ (TATFAR), 29 and the ‘European Research Network, ERA-NET Scheme’, 30 are also needed to help foster a culture of data and technology sharing/transfer between animal and human health fields. 

To be continued...
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Kamis, 28 April 2016

Bad This Bad That Bad Ben Goldacre

I was ignorant on the ways of Goldacres Guardians columns until the day I read, perhaps in one of the great blogs I advertise down below on the left, that Goldacres was a Guru in search of the truth. After reading a very brief mention to his writing ability I decided to search for his books. Firstly, I found his picture and immediately got startled by an Einstein-figurine that through times has been vindicating that crazy hairdos do not have to linearly belong to crazy people. Somehow still yet inebriated by my secular iconoclast soul I decided to give this author a chance... and what an amazing surprise I was hit with. Probably, for most of the Brits I work with, Goldacre is a must since they were like sixteen. How surprised did they sound when I revealed that this writer, doctor, columnist, man of a thousand jobs, was new to me and I had yet to let him captivate me if he was to stand a chance of belonging to my personal library.

I dont care how surprised my colleagues sounded, or the extent of their irony. How can people who have no idea who Saramago was, Pessoa, Miguel Torga, Eca de Queiroz, or the most contemporary, Sophia de Mello Breyner, Lobo Antunes and Agustina Bessa-Luis, claim ignorance on anything. OK, now Im being rough, but you understand my point guys, somehow I had to advertise the great writers from my country who more than deserve to be read by all of you. Well, lets move forward! Reading is knowledge and regardless of when it hit you, it is always welcome. And I must say that even though it might sound a tad arrogant, Ben Goldacre knows his way with words, facts and arguments that cement his intrepid ideas. Intrepid because he messes with a secret-shaped mud, revolves the ground that hides the truth and exposes the facts based on other even more real facts. Nevertheless, and even though he assumes that his exposures might direct people to over-criticism of science and pharma, it is very easy to drift reasoning and assume passion if one is not careful and blindly think that if in the populace theres a black sheep, all sheep are thus, black.

I recently purchased two great books from Ben Goldacres collection, one is a best-seller, the other is a continuum of his investigatory attitude towards dismantling the monsters we all applaud without even blinking.  I must exacerbate that I am not anti-pharma, or even anti-science (how could I?), not at all. I love pharma, I love science, they are necessary domains that complement each other and replenish the world with progress. What I hate in fact is ignorance, as I do not consider it bliss. And I pity people who love being ignorant. Goldacre is not a guru, I have no patience for gurus. Goldacre is a guy who investigates pretty well, exposes it in a very simple, funny, pungent way, and then, after youve been served, you are left craving more... Truth!


Title: "Bad Science"
Author: Ben Goldacre
Label: Fourth Estate
Year: First published in Great Britain in 2008
Price: £4.30 on Amazon (sold by World of Books Ltd)
Public review: 4.4 stars
Public comment:












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Title: "Bad Pharma"
Author: Ben Goldacre
Label: Fourth Estate
Year: First published in Great Britain in 2012
Price: £6.54 on Amazon (sold by SuperBookDeals)
Public review: 4.5 stars
Public comment:











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Jumat, 22 April 2016

New Year New Label New Books

2014 started nearly a month ago but the Christmas Spirit is here to stay, so imbued of that holy magnificent giving-away spirit I decide to keep offering me stuff that I really desired for. Note that I never mentioned "need for", even though it is stuff so good that its inherent quality make these items utterly necessary.

I talk you guys about BOOKS. One of my passions. I read on the way to work and I read on the way home. Sometimes, most of the times actually, I skip taking the bus that would shorten my trip to work to some direct/boring 8 minutes in a  bad traffic day, and I delight myself with a good reading in a 30 minutes walk that makes me wish for more. 

I enjoy the fresh air and also the very interesting things I put my eyes on.

Recently Ive been reading 8 books at a time. Odd? No. I get bored very easily if the intensity of the literature in kind of roller-coasting through my retinas. But then I thought it would be great to start a book label here in the blog, literature concerning science obviously, but not that boring tedious amalgam of heavy weight wording with loads of definitions, concepts and formulas. This is to be interesting above all; interesting and enticing. 

For starters, let me introduce you one of the four books I just purchased through Amazon, on some very indulging prices. Some are used but who really cares?, as long as I can read the words and see the images properly, Im game!

Title: "Forensics"
Author: Richard Platt
Label: Kingfisher Knowledge
Year: First published in 2005
Price: £2.15, used but in a very good state
Public review stars: 4 stars
Public comment: 





Starting quote from book:





Link: http://books.google.co.uk/books?id=uEZrWdQt5ZUC&printsec=frontcover#v=onepage&q&f=false
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UPDATE ON THE 06TH OF FEBRUARY AFTER READING HALF OF THE BOOK:
OK, its quite acceptable as you learn new things. But its a very general approach to forensics. Nice for kids or people who have no knowledge at all on forensics and thrive on it. If youre a student on your GCSEs and need a career enlightenment, this book "might" help you slightly on your decision making. I would rate it for "teenagers" and people with no knowledge of science whatsoever.
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I will come back soon to you guys with info on the other three I bought. Just let me handle primordial things better because being a dad, doing a PhD and writing up is a tough challenge :D
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Rabu, 20 April 2016

Year Two Putting Our Roots Down

"Gratitude necessitates blessing."


July 1st marks the second anniversary of Soul Flower Farm.  For two years now we have been stewards of this small piece of land on a hilly slope, nestled in the east bay area.  How our lives have changed as we have settled in and grown a deeper relationship to the soil, our animals, and each other, is difficult to describe in words.  



In the last year, while our days have been filled with the tasks of starting seeds, caring for chickens and goats, and tending the garden, we have also been watching with awe, our boys grow into men.  And when we look back at this second year here we can remember some extraordinary experiences; learning to build with cob, discovering a wonderful community, catching slippery kids as they dove their way -nose first- into the world, bringing home our first jersey cow and then breeding her.  There have still been countless cups of tea, back breaking work, blood, sweat, tears, swarms, and so much laughter.


With the invaluable experience of neighbors, trial and error, a fearless curiosity, and of course a bit of risk taking, our knowledge is increasing, as is our confidence.  Having the opportunity to tap into the rhythms of nature in our daily lives will never be a blessing we take for granted.  

getting dirty at sustainable building workshop
finished cob oven and bench
fresh goats milk cheese
aerial view after community work party April 2012
2011 kitchen overflowing with harvest
natural beekeeping
first born set of kids
Oberhasli/Sable Saanen cross
feral chickens we adopted


We pray our adventures will continue.  And what is in the plan for year three?...aquaponics, a super adobe in-law unit,  more classes, community outreach, perhaps a CSA box, fresh raw cows milk that can only come with a little calf, and a family vacation!


Top Photo by 
Lori Eanes









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Minggu, 17 April 2016

UK Five Year Antimicrobial Resistance Strategy 2013 to 2018 Part II of II

If you have missed the first part of this summary, please check the previous post by accessing here.
As explained before, I read the 43 pages that together constitute the UK five year antimicrobial resistance strategy 2013-2018 and summarised the hot lines for those who cannot be bothered reading it in full or just have too much on their plates at the moment. Anyways, here is the second part:

Meeting the Challenge

The UK government cannot deliver the action necessary to minimise the spread of AMR on its own.

This [...] describes the constitution and types of activities each sector is being asked to make to help deliver the overarching actions detailed in Annex B. They are broadly grouped under the 3 strategic aims of the Strategy.

The Human Health and Social Care Sector

Improve the knowledge and understanding of AMR by:
  • finding ways to raise awareness, increase public engagement and encourage societal changes in behaviour.
Stimulate the development of new antibiotics, diagnostics and novel therapies by:
  • implementing new immunisation programmes as recommended by the Joint Committee on Vaccination and Immunisation (JCVI),38 improving vaccination coverage by those groups with traditionally low uptake and promoting development of new vaccines including those used against multi-drug resistant organisms.
Livestock, Food Retail and Veterinary Sectors

Conserve and steward the effectiveness of existing treatments by:
  • encouraging animal keepers to work closely with their veterinary surgeons to prioritise diagnosis of disease in livestock and companion animals, and to encourage early use of appropriate diagnostic testing, in particular, bacterial culture and sensitivity tests,
Research Councils, other research funders and academics

Improve the knowledge and understanding of AMR by:

  • developing AMR research capability in the following areas:
  1.  o novel approaches to surveillance and better integration of information infrastructure to determine the spread of infectious disease and resistance (including across species),
  2.  development and use of rapid diagnostics, including point-of-care diagnostics to avoid inappropriate treatment and reduce antibiotic misuse,
  3.  innovation in antimicrobial development and the provision of evidence for novel molecules to be developed into drugs.
Conserve and steward the effectiveness of existing treatments by:
  • exploring the possibility of developing a ‘drug resistance index’ to communicate gaps in antibiotic effectiveness to non-experts and help aggregate data on resistance to various drugs to assess trends in drug resistance over time and across locations,
Pharmaceutical Industry

Industry has a corporate and social responsibility to contribute to work to tackle AMR by finding ways of extending the life of antibiotics, making the supply of effective antibiotics sustainable, facilitating society in being better custodians of these valuable resources and using them optimally both now and the future.

Stimulate the development of new antibiotics, rapid diagnostics and novel therapies by:
  • developing new treatments for all infections
  • developing new vaccines targeted at multi-resistant organisms.
I honestly hope this summary made a difference and helped you understand the aims, objectives and strategies studied to tackle antimicrobial drug resistance in the UK. If you want to access the original document please access here.
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Selasa, 05 April 2016

A Fabulous Year!

 July 1, 2011 marked our one year anniversary at Soul Flower Farm.  Wow...a year of sweat, laughter, aching muscles, amazing discoveries, hours and hours of digging, dreams realized, lots of bruises, bee stings, breathtaking views, uncountable cups of tea, wonderful neighbors, goat and chicken love, so much learning, and above all GRATITUDE!  Here are some pictures of our blessed first year as aspiring farmers...
a classic:  Yasir on his 1947 tractor

site of medicine wheel, before

medicine wheel in full bloom



Following are some pictures of the evolution of our south facing hillside.  From waist high weeds to shoulder high grains. 
 after scarification, before planting
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sheet mulching, first steps



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finished sheet mulched beds
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Some of the beds were then double dug, some we planted into the sheet mulch.  We tried out a variety of crops to see what would grow well in our soil.



red, orange, and green amaranth, quinoa on the right



cucumbers

sweet  and popping corn

watermelon

early pumpkin patch

Now:  zucchini, pumpkins, pink banana squash, kabocha squash and tomatoes


Original front yard turned into a perennial kitchen garden.


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tree collards in kitchen garden

Lima bean tepee
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lavender, mint and perennial vegis
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What a year.  Much love to all of you who helped and supported us.  All the new friends, advice, and company are greatly appreciated.  We are praying for and working toward another year of growth? and learning. 




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